| # | Episode | Title | Original Air Date |
| 1 | S01:E01 | Pilot | September 29, 1985 |
| 2 | S01:E02 | The Golden Triangle | October 6, 1985 |
| 3 | S01:E03 | Thief of Budapest | October 13, 1985 |
| 4 | S01:E04 | The Gauntlet | October 20, 1985 |
| 5 | S01:E05 | The Heist | November 3, 1985 |
| 6 | S01:E06 | Trumbo's World | November 10, 1985 |
| 7 | S01:E07 | Last Stand | November 17, 1985 |
| 8 | S01:E08 | Hellfire | November 24, 1985 |
| 9 | S01:E09 | The Prodigal | December 8, 1985 |
| 10 | S01:E10 | Target MacGyver | December 22, 1985 |
| 11 | S01:E11 | Nightmares | January 15, 1986 |
| 12 | S01:E12 | Deathlock | January 22, 1986 |
| 13 | S01:E13 | Flame's End | January 29, 1986 |
| 14 | S01:E14 | Countdown | February 5, 1986 |
| 15 | S01:E15 | The Enemy Within | February 12, 1986 |
| 16 | S01:E16 | Every Time She Smiles | February 19, 1986 |
| 17 | S01:E17 | To Be a Man | March 5, 1986 |
| 18 | S01:E18 | Ugly Duckling | March 12, 1986 |
| 19 | S01:E19 | Slow Death | April 2, 1986 |
| 20 | S01:E20 | The Escape | April 16, 1986 |
| 21 | S01:E21 | A Prisoner of Conscience | April 30, 1986 |
| 22 | S01:E22 | The Assassin | May 7, 1986 |
| 23 | S02:E01 | The Human Factor | September 22, 1986 |
| 24 | S02:E02 | The Eraser | September 29, 1986 |
| 25 | S02:E03 | Twice Stung | October 6, 1986 |
| 26 | S02:E04 | The Wish Child | October 20, 1986 |
| 27 | S02:E05 | Final Approach | October 27, 1986 |
| 28 | S02:E06 | Jack of Lies | November 3, 1986 |
| 29 | S02:E07 | The Road Not Taken | November 10, 1986 |
| 30 | S02:E08 | Eagles | November 17, 1986 |
| 31 | S02:E09 | Silent World | November 24, 1986 |
| 32 | S02:E10 | Three for the Road | December 15, 1986 |
| 33 | S02:E11 | Phoenix Under Siege | January 5, 1987 |
| 34 | S02:E12 | Family Matter | January 12, 1987 |
| 35 | S02:E13 | Soft Touch | January 19, 1987 |
| 36 | S02:E14 | Birth Day | February 2, 1987 |
| 37 | S02:E15 | Pirates | February 9, 1987 |
| 38 | S02:E16 | Out in the Cold | February 16, 1987 |
| 39 | S02:E17 | Dalton, Jack of Spies | February 23, 1987 |
| 40 | S02:E18 | Partners | March 2, 1987 |
| 41 | S02:E19 | Bushmaster | March 23, 1987 |
| 42 | S02:E20 | Friends | April 6, 1987 |
| 43 | S02:E21 | D.O.A.: MacGyver | April 27, 1987 |
| 44 | S02:E22 | For Love or Money | May 4, 1987 |
| 45 | S03:E01 | Lost Love (Part 1) | September 21, 1987 |
| 46 | S03:E02 | Lost Love (Part 2) | September 28, 1987 |
| 47 | S03:E03 | Back from the Dead | October 5, 1987 |
| 48 | S03:E04 | Ghost Ship | October 19, 1987 |
| 49 | S03:E05 | Fire and Ice | October 26, 1987 |
| 50 | S03:E06 | GX-1 | November 2, 1987 |
| 51 | S03:E07 | Jack in the Box | November 9, 1987 |
| 52 | S03:E08 | The Widowmaker | November 16, 1987 |
| 53 | S03:E09 | Hell Week | November 23, 1987 |
| 54 | S03:E10 | Blow Out | December 21, 1987 |
| 55 | S03:E11 | Kill Zone | January 4, 1988 |
| 56 | S03:E12 | Early Retirement | January 18, 1988 |
| 57 | S03:E13 | Thin Ice | February 1, 1988 |
| 58 | S03:E14 | The Odd Triple | February 29, 1988 |
| 59 | S03:E15 | The Negotiator | March 7, 1988 |
| 60 | S03:E16 | The Spoilers | March 14, 1988 |
| 61 | S03:E17 | Mask of the Wolf | March 28, 1988 |
| 62 | S03:E18 | Rock the Cradle | April 18, 1988 |
| 63 | S03:E19 | The Endangered | May 2, 1988 |
| 64 | S03:E20 | Murderers' Sky | May 9, 1988 |
| 65 | S04:E01 | The Secret of Parker House | October 31, 1988 |
| 66 | S04:E02 | Blood Brothers | November 21, 1988 |
| 67 | S04:E03 | The Outsiders | November 28, 1988 |
| 68 | S04:E04 | On a Wing and a Prayer | December 5, 1988 |
| 69 | S04:E05 | Collision Course | December 12, 1988 |
| 70 | S04:E06 | The Survivors | January 9, 1989 |
| 71 | S04:E07 | Deadly Dreams | January 16, 1989 |
| 72 | S04:E08 | Ma Dalton | January 23, 1989 |
| 73 | S04:E09 | Cleo Rocks | February 6, 1989 |
| 74 | S04:E10 | Fraternity of Thieves | February 13, 1989 |
| 75 | S04:E11 | The Battle of Tommy Giordano | February 20, 1989 |
| 76 | S04:E12 | The Challenge | February 27, 1989 |
| 77 | S04:E13 | Runners | March 13, 1989 |
| 78 | S04:E14 | Gold Rush | March 27, 1989 |
| 79 | S04:E15 | The Invisible Killer | April 10, 1989 |
| 80 | S04:E16 | Brainwashed | April 24, 1989 |
| 81 | S04:E17 | Easy Target | May 1, 1989 |
| 82 | S04:E18 | Renegade | May 8, 1989 |
| 83 | S04:E19 | Unfinished Business | May 15, 1989 |
| 84 | S05:E01 | Legend of the Holy Rose (Part 1) | September 18, 1989 |
| 85 | S05:E02 | Legend of the Holy Rose (Part 2) | September 25, 1989 |
| 86 | S05:E03 | The Black Corsage | October 2, 1989 |
| 87 | S05:E04 | Cease Fire | October 9, 1989 |
| 88 | S05:E05 | Second Chance | October 16, 1989 |
| 89 | S05:E06 | Halloween Knights | October 30, 1989 |
| 90 | S05:E07 | Children of Light | November 6, 1989 |
| 91 | S05:E08 | Black Rhino | November 13, 1989 |
| 92 | S05:E09 | The Ten Percent Solution | November 20, 1989 |
| 93 | S05:E10 | Two Times Trouble | December 11, 1989 |
| 94 | S05:E11 | The Madonna | December 18, 1989 |
| 95 | S05:E12 | Serenity | January 8, 1990 |
| 96 | S05:E13 | Live and Learn | January 15, 1990 |
| 97 | S05:E14 | Log Jam | February 5, 1990 |
| 98 | S05:E15 | The Treasure of Manco | February 12, 1990 |
| 99 | S05:E16 | Jenny's Chance | February 19, 1990 |
| 100 | S05:E17 | Deep Cover | February 26, 1990 |
| 101 | S05:E18 | The Lost Amadeus | March 19, 1990 |
| 102 | S05:E19 | Hearts of Steel | April 9, 1990 |
| 103 | S05:E20 | Rush to Judgement | April 16, 1990 |
| 104 | S05:E21 | Passages | April 30, 1990 |
| 105 | S06:E01 | Tough Boys | September 17, 1990 |
| 106 | S06:E02 | Humanity | September 24, 1990 |
| 107 | S06:E03 | The Gun | October 1, 1990 |
| 108 | S06:E04 | Twenty Questions | October 8, 1990 |
| 109 | S06:E05 | The Wall | October 22, 1990 |
| 110 | S06:E06 | Lesson in Evil | October 29, 1990 |
| 111 | S06:E07 | Harry's Will | November 5, 1990 |
| 112 | S06:E08 | MacGyver's Women | November 12, 1990 |
| 113 | S06:E09 | Bitter Harvest | November 19, 1990 |
| 114 | S06:E10 | The Visitor | December 3, 1990 |
| 115 | S06:E11 | Squeeze Play | December 17, 1990 |
| 116 | S06:E12 | Jerico Games | January 7, 1991 |
| 117 | S06:E13 | The Wasteland | January 21, 1991 |
| 118 | S06:E14 | Eye of Osiris | February 4, 1991 |
| 119 | S06:E15 | High Control | February 11, 1991 |
| 120 | S06:E16 | There But For the Grace | February 18, 1991 |
| 121 | S06:E17 | Blind Faith | March 4, 1991 |
| 122 | S06:E18 | Faith, Hope & Charity | March 18, 1991 |
| 123 | S06:E19 | Strictly Business | April 8, 1991 |
| 124 | S06:E20 | Trail of Tears | April 29, 1991 |
| 125 | S06:E21 | Hind-Sight | May 6, 1991 |
| 126 | S07:E01 | Honest Abe | September 16, 1991 |
| 127 | S07:E02 | The 'Hood | September 23, 1991 |
| 128 | S07:E03 | Obsessed | September 30, 1991 |
| 129 | S07:E04 | The Prometheus Syndrome | October 7, 1991 |
| 130 | S07:E05 | The Coltons | October 14, 1991 |
| 131 | S07:E06 | Walking Dead | October 21, 1991 |
| 132 | S07:E07 | Good Knight MacGyver (Part 1) | November 4, 1991 |
| 133 | S07:E08 | Good Knight MacGyver (Part 2) | November 11, 1991 |
| 134 | S07:E09 | Deadly Silents | November 18, 1991 |
| 135 | S07:E10 | Split Decision | December 2, 1991 |
| 136 | S07:E11 | Gunz 'N Boyz | December 16, 1991 |
| 137 | S07:E12 | Off the Wall | December 30, 1991 |
| 138 | S07:E13 | The Stringer | April 25, 1992 |
| 139 | S07:E14 | The Mountain of Youth | May 21, 1992 |
| 140 | S08:E01 | Lost Treasure of Atlantis (TV Movie) | May 14, 1994 |
| 141 | S08:E02 | Trail to Doomsday (TV Movie) | November 24, 1994 |